PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009121540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 366aa    MW: 41572.1 Da    PI: 7.3374
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009121540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.8e-061961440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    r C+++++   + +C+ ++ +lC++C  + H+       H++v
  XP_009121540.1 19 RACDTCGSTICTVYCHADSAYLCNSCDAQVHSAnrvasrHKRV 61
                    78******99*********************667788888876 PP

2zf-B_box32.32e-1060106242
        zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     + r+C+ +e+ ++ + Ce +++ lC  C le H+       H++vp+
  XP_009121540.1  60 RVRVCESCERAPAAFMCEADDVSLCTACDLEVHSAnplarrHQRVPV 106
                     5689*****************************66899999*99986 PP

3CCT65.31.7e-22293336144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR++GrF+k +
  XP_009121540.1 293 REARVLRYREKKKRRKFEKTIRYASRKAYAERRPRINGRFAKIS 336
                     9****************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.6E-91663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1251663IPR000315B-box-type zinc finger
CDDcd000211.06E-61963No hitNo description
PROSITE profilePS5011911.81859106IPR000315B-box-type zinc finger
PfamPF006432.0E-861106IPR000315B-box-type zinc finger
CDDcd000216.82E-962106No hitNo description
SMARTSM003361.2E-1164106IPR000315B-box-type zinc finger
PfamPF062032.4E-16293334IPR010402CCT domain
PROSITE profilePS5101716.073293335IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0010018Biological Processfar-red light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MFKQESNNIG SEENNTGPRA CDTCGSTICT VYCHADSAYL CNSCDAQVHS ANRVASRHKR  60
VRVCESCERA PAAFMCEADD VSLCTACDLE VHSANPLARR HQRVPVVPIT GNSCSSLATA  120
NHTTVTEPEK RVVLVQEDAK ETASWLFPKN SDNHNNNNQN NELLFSDDYL DLADYNSSMD  180
YKFTGQYNQP TQHKQDCTVP EKNYGGDRVV PLQLEETRGN LHHKQHNITY GSSGSHYNNN  240
GSINHNAYNP SMETDFVPEQ TAPDKTVSHP KTHKGKIEKL PEPLIQILSP MDREARVLRY  300
REKKKRRKFE KTIRYASRKA YAERRPRING RFAKISETEV EDQEYNTMLM YYDTGYGIVP  360
SFYGQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302306KKKRR
2302307KKKRRK
3303307KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2808680.0AY280868.2 Brassica napus putative beta-glucan elicitor receptor (Bger1), constans-like protein (CoL), and constans (Coa1) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121540.10.0PREDICTED: zinc finger protein CONSTANS
SwissprotQ390570.0CONS_ARATH; Zinc finger protein CONSTANS
TrEMBLO488830.0O48883_BRANA; Constans
TrEMBLM4CWS20.0M4CWS2_BRARP; Uncharacterized protein
STRINGBra008669.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.11e-152B-box type zinc finger protein with CCT domain